Package: DYNATE 0.1

DYNATE: Dynamic Aggregation Testing

A multiple testing procedure aims to find the rare-variant association regions. When variants are rare, the single variant association test approach suffers from low power. To improve testing power, the procedure dynamically and hierarchically aggregates smaller genome regions to larger ones and performs multiple testing for disease associations with a controlled node-level false discovery rate. This method are members of the family of ancillary information assisted recursive testing introduced in Pura, Li, Chan and Xie (2021) <arxiv:1906.07757v2> and Li, Sung and Xie (2021) <arxiv:2103.11085v2>.

Authors:Xuechan Li [aut, cre], Jichun Xie [ctb]

DYNATE_0.1.tar.gz
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DYNATE.pdf |DYNATE.html
DYNATE/json (API)

# Install 'DYNATE' in R:
install.packages('DYNATE', repos = c('https://xuechan-li.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 6 scripts 264 downloads 2 exports 109 dependencies

Last updated 2 years agofrom:2626c699a4. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-winOKNov 11 2024
R-4.5-linuxOKNov 11 2024
R-4.4-winOKNov 11 2024
R-4.4-macOKNov 11 2024
R-4.3-winOKNov 11 2024
R-4.3-macOKNov 11 2024

Exports:DYNATETest_Leaf

Dependencies:askpassbackportsbase64encbitbit64blobbroombslibcachemcallrcellrangerclicliprcolorspaceconflictedcpp11crayoncurldata.tableDBIdbplyrdigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshttridsisobandjquerylibjsonliteknitrlabelinglatticelifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmunsellnlmeopensslpillarpkgconfigplyrprettyunitsprocessxprogresspspurrrR6raggrappdirsRColorBrewerRcppreadrreadxlrematchrematch2reprexreshape2rlangrmarkdownrstudioapirvestsassscalesselectrstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextzdbutf8uuidvctrsviridisLitevroomwithrxfunxml2yaml

DYNATE

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Last update: 2022-10-14
Started: 2022-10-14